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GTEx

What can the tiny differences in DNA sequences among a thousand different people tell us about a heart's decision to turn a gene on or keep it silent? What about the prefrontal cortex, or even a salivary gland? The Genotype-Tissue Expression (GTEx) project aims to answer these questions, and we help them visualize this vast array of data while looking for patterns that may unravel these mysteries. We worked with GTEx computational biologists to develop many custom visualization tools like expression heatmap, Transcript Browser, LocusBrowser for exploring gene expression and understanding the association of genetic variation through eQTL data.

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A heatmap colored with varying shades of blue, tilted to the side 45 degrees so that it takes a diagonal shape.

Screenshots

  • GTEx screenshot 1
  • GTEx screenshot 2
  • GTEx screenshot 3

Contact

We collaborate with Broad teams to explore new visualization ideas and build prototypes.

Have a visualization idea or project in mind? Email us at: pattern@broadinstitute.org.

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